Difference between revisions of "BiologicalLifeResearch"
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<pre style="color: green">Biological Life Research</pre> | <pre style="color: green">Biological Life Research</pre> | ||
[[Home]] -> [[BiologicalLifeResearch]] | [[Home]] -> [[BiologicalLifeResearch]] | ||
| Line 11: | Line 10: | ||
__TOC__ | __TOC__ | ||
| − | = | + | = Overview = |
| + | |||
| + | * '''Biological Model''' contains '''Central Nervous System''' (CNS), '''Peripheral Nervous System''' (PNS) and human '''Target Sensors''' and '''Target Effectors''', connected together and systematically described in machine-readable format | ||
| + | * Model data are divided into '''Engine Data''' (mind.xml, target.xml), '''Internal Model Data''' (hmind, muscles, nerves, global.xml) and '''External Model Data''' (circuits) | ||
| + | ** Engine Data are divided into | ||
| + | *** '''Engine Core Data''' (mind.xml, mind.core.xml) - most probably universal items, independent of biological nature or phenotype | ||
| + | *** '''Engine Lifecycle Data''' (mind.lifecycle.xml) - items supporting life functions of biological organism | ||
| + | *** '''Engine Specific Data''' (mind.specific.xml, mind.integration.xml) - nervous system items responsible for handling specific human organs | ||
| + | *** '''Engine Target Data''' (target.xml) - final sets of human sensors and effectors | ||
| + | ** Internal Model Data provide human-readable descriptions and additional details | ||
| + | *** '''Global Circuits''' are independent overlapping groups of regions (global.xml) which shed light on specific modality of mind function across many Mind Areas | ||
| + | ** External Model Data provide thirdparty models, partial and sometimes contradicting, with their own visualization and schema linked with aHuman items identification | ||
| + | * Detailed data are grouped using two distinct structures - '''Brain Centers''' and '''Mind Areas''' | ||
| + | ** Brain Centers are well-known anatomical groups existing as major solid structures or sets of nuclei or cortices, located on specific anatomical area | ||
| + | ** Mind Areas are aHuman functional structures grouping items implementing major mind functions | ||
| + | *** Every Mind Area is a set of non-overlapping '''Local Circuits''' | ||
| + | **** Local Circuit contains specific mind regions, circuits internal inter-region connections and circuit outbound connections, which establish brain area subfunction or the same function but handling specific aspect of human organism | ||
| − | * [[OverallMindMaps|Mind Maps]] | + | '''See further information:''' |
| − | * [[MindTracts|Mind Tracts]] | + | * Description of model elements and attributes - [[BiologicalModel|Biological Model Metadata]] |
| − | * [[PeripheralBrain|Peripheral Brain]] | + | * Full mind hierarchy - [[OverallMindMaps|Mind Maps]] |
| − | * [[OverallNeuralNetworks|Neural Networks]] | + | * Spinal and cranial tracts - [[MindTracts|Mind Tracts]] |
| − | * [[OverallCircuits|Overall Circuits]] | + | * Peripheral nervous System - [[PeripheralBrain|Peripheral Brain]] |
| − | * [[OverallBrainDevelopment|Brain Development]] | + | * Nervous tissue types - [[OverallNeuralNetworks|Neural Networks]] |
| + | * Global functional circuits - [[OverallCircuits|Overall Circuits]] | ||
| + | * How brain is developed from the very beginning - [[OverallBrainDevelopment|Brain Development]] | ||
| − | = | + | = Mind Areas = |
'''Approach of defining areas''': | '''Approach of defining areas''': | ||
| Line 32: | Line 49: | ||
{| class=wikitable width=80% | {| class=wikitable width=80% | ||
| − | | '''Area Code''' || '''Area Name''' || '''Function''' || '''Comments''' | + | | '''Area Code''' || '''Area Name''' || '''Type''' || '''Function''' || '''Comments''' |
|- | |- | ||
| − | | <font color="red">aHuman</font> || || || | + | | <font color="red">aHuman</font> || || || || |
|- | |- | ||
| − | | '''TSA''' || [[BrainAreaTSA|Target Sensory Area]] || aHuman Target Sensors || Biological Sensors | + | | '''TSA''' || [[BrainAreaTSA|Target Sensory Area]] || target || aHuman Target Sensors || Biological Sensors |
|- | |- | ||
| − | | '''TEA''' || [[BrainAreaTEA|Target Effectory Area]] || aHuman Target Effectors || Biological Motors | + | | '''TEA''' || [[BrainAreaTEA|Target Effectory Area]] || target || aHuman Target Effectors || Biological Motors |
|- | |- | ||
| − | | <font color="red">Lower Brain</font> || || || | + | | <font color="red">Lower Brain</font> || || || || |
|- | |- | ||
| − | | ''' | + | | '''LLC''' || [[BrainAreaLLC|Locomotion Control Area]] || core || Learned Rythmic Movements || Locomotion Nuclei and Cerebellum |
|- | |- | ||
| − | | ''' | + | | '''LAC''' || [[BrainAreaLAC|Autonomous Control Area]] || lifecycle || Autonomic Nuclei and Ganglia || Nuclei to Control Autonomic Organs and Autonomic Ganglia |
|- | |- | ||
| − | | ''' | + | | '''LMC''' || [[BrainAreaLMC|Modulatory Contol Area]] || lifecycle || Ascending and Descending Non-Specific Modulation || Includes Nuclei Projecting Both Up and Down |
|- | |- | ||
| − | | ''' | + | | '''LPC''' || [[BrainAreaLPC|Peripheral Control Area]] || specific || Conscious Control of Target || Sensory Ganglia, Conscious Sensory and Motor Nuclei |
|- | |- | ||
| − | | ''' | + | | '''LRC''' || [[BrainAreaLRC|Motor Reflex Area]] || specific || Reflexive Motor Behavior || Nuclei of Reflex Circuits Resulting in Motor Behavior and Posture Maintenance |
|- | |- | ||
| − | | <font color="red">Forebrain</font> || || || | + | | <font color="red">Forebrain</font> || || || || |
|- | |- | ||
| − | | '''FEC''' || [[BrainAreaFEC|Execution Control Area]] || Executing Motor Sequences || Premotor and Supplemental Sequences are Wrapped out via Basal Ganglia | + | | '''FEC''' || [[BrainAreaFEC|Execution Control Area]] || core || Executing Motor Sequences || Premotor and Supplemental Sequences are Wrapped out via Basal Ganglia |
|- | |- | ||
| − | | '''FAM''' || [[BrainAreaFAM|Affective Motivations Area]] || Aggregate Body and Mental Motivations || Merges Top Body Feeling and Sensory Streams | + | | '''FAM''' || [[BrainAreaFAM|Affective Motivations Area]] || core || Aggregate Body and Mental Motivations || Merges Top Body Feeling and Sensory Streams |
|- | |- | ||
| − | | '''FMM''' || [[BrainAreaFMM|Memory Management Area]] || Establish Hierarchical Memory || Top of Sensory Hierarchy | + | | '''FMM''' || [[BrainAreaFMM|Memory Management Area]] || core || Establish Hierarchical Memory || Top of Sensory Hierarchy |
|- | |- | ||
| − | | <font color="red">Neocortical Brain</font> || || || | + | | <font color="red">Neocortical Brain</font> || || || || |
|- | |- | ||
| − | | ''' | + | | '''NMA''' || [[BrainAreaNMA|Motor Aggregation Area]] || core || Motor Hierarhical Aggregation || Wrap Out Motor Sequences to Specific Motor Steps |
|- | |- | ||
| − | | ''' | + | | '''NDM''' || [[BrainAreaNDM|Decision Making Area]] || core || Sensory-Drive Associations with Working Memory || Choose Actions and Create Working Memory |
|- | |- | ||
| − | | ''' | + | | '''NCP''' || [[BrainAreaNCP|Conscious Personality Area]] || core || Produce Mental Feeling || Handle Pain and Errors |
|- | |- | ||
| − | | ''' | + | | '''NSA''' || [[BrainAreaNSA|Sensory Aggregation Area]] || specific || Unimodal Sensory Aggregation || Neocortical Sensory Data and Unimodal Aggregation |
|- | |- | ||
| − | | ''' | + | | '''NPE''' || [[BrainAreaNPE|Unimodal Execution Area]] || specific || Initiate Polymodal Execution || Aggregate polymodal data, direct to planning and decision making |
|} | |} | ||
| Line 79: | Line 96: | ||
'''Forebrain Diencephalon''' (FD): | '''Forebrain Diencephalon''' (FD): | ||
* [[BrainCenterFAM_FD_HB|Habenula]] (FAM.FD.HB) | * [[BrainCenterFAM_FD_HB|Habenula]] (FAM.FD.HB) | ||
| − | * [[ | + | * [[BrainCenterFD_HT|Hypothalamus]] (FD.HT) |
| − | * [[BrainRegionLPC_FD_RT| | + | * [[BrainRegionLPC_FD_RT|Retinal Nucleus]] (LPC.FD.RT) |
| − | * [[ | + | * [[BrainCenterFEC_FD_STA|Subthalamus Area]] (FEC.FD.STA) |
| − | * [[ | + | * Thalamus |
| + | ** [[BrainCenterFD_TH_CR|Cognitive Thalamus]] (FD.TH.CR) | ||
| + | ** [[BrainCenterFD_TH_MR|Motor Thalamus]] (FD.TH.MR) | ||
| + | ** [[BrainCenterFD_TH_SR|Sensory Thalamus]] (FD.TH.SR) | ||
'''Forebrain Telencephalon''' (FT): | '''Forebrain Telencephalon''' (FT): | ||
| − | * [[ | + | * [[BrainCenterFEC_FT_BG|Basal Ganglia]] (FEC.FT.BG) |
* Extended Amygdala | * Extended Amygdala | ||
** [[BrainCenterFAM_FT_AM|Amygdala]] (FAM.FT.AM) | ** [[BrainCenterFAM_FT_AM|Amygdala]] (FAM.FT.AM) | ||
** [[BrainCenterFAM_FT_CEAM|Central Extended Amygdala]] (FAM.FT.CEAM) | ** [[BrainCenterFAM_FT_CEAM|Central Extended Amygdala]] (FAM.FT.CEAM) | ||
** [[BrainCenterFAM_FT_SEP|Septal Nuclei]] (FAM.FT.SEP) | ** [[BrainCenterFAM_FT_SEP|Septal Nuclei]] (FAM.FT.SEP) | ||
| − | * [[ | + | * [[BrainCenterFMM_FT_HF|Hippocampal Formation]] (FMM.FT.HF) |
| − | * [[ | + | * [[BrainCenterFT_OLF|Olfactory Nuclei]] (FT.OLF) |
'''Hindbrain Myelencephalon''' (HL): | '''Hindbrain Myelencephalon''' (HL): | ||
| − | * [[ | + | * [[BrainCenterHL_RF|Medullary Reticular Formation]] (HL.RF) |
| − | * [[ | + | * [[BrainCenterHL_MN|Myelencephalic Motor Nuclei]] (HL.MN) |
| − | * [[ | + | * [[BrainCenterHL_PSN|Myelencephalic Parasympathetic Nuclei]] (HL.PSN) |
| − | * [[ | + | * [[BrainCenterHL_SN|Myelencephalic Sensory Nuclei]] (HL.SN) |
'''Hindbrain Metencephalon''' (HT): | '''Hindbrain Metencephalon''' (HT): | ||
| − | * [[ | + | * [[BrainCenterLLC_HT_CRC|Cerebellar Complex]] (LLC.HT.CRC) |
| − | * [[ | + | * [[BrainRegionLMC_HT_LC|Locus Coeruleus]] (LMC.HT.LC) |
| − | * [[ | + | * [[BrainCenterHT_MN|Metencephalic Motor Nuclei]] (HT.MN) |
| − | * [[ | + | * [[BrainCenterHT_SN|Metencephalic Sensory Nuclei]] (HT.SN) |
| − | * [[ | + | * [[BrainCenterHT_RF|Pontine Reticular Formation]] (HT.RF) |
| − | * [[ | + | * [[BrainCenterHT_TG|Pontine Tegmental Nuclei]] (HT.TG) |
| + | * [[BrainCenterLPC_HT_VBN|Vestibular Nuclei]] (LPC.HT.VBN) | ||
'''Midbrain Mesencephalon''' (MM): | '''Midbrain Mesencephalon''' (MM): | ||
| − | |||
* [[BrainCenterMM_RF|Mesencephalic Reticular Formation]] (MM.RF) | * [[BrainCenterMM_RF|Mesencephalic Reticular Formation]] (MM.RF) | ||
| − | * [[ | + | * [[BrainCenterMM_PER|Perhipheral Nuclei of Midbrain Mesencephalon]] (MM.PER) |
| − | + | ||
* [[BrainRegionLMC_MM_PAG|Periaqueductal Gray Matter]] (LMC.MM.PAG) | * [[BrainRegionLMC_MM_PAG|Periaqueductal Gray Matter]] (LMC.MM.PAG) | ||
| + | * [[BrainRegionLLC_MM_RD|Red Nucleus]] (LLC.MM.RD) | ||
| + | * [[BrainCenterMM_REF|Reflexes Nuclei of Midbrain Mesencephalon]] (MM.REF) | ||
* [[BrainRegionLMC_MM_VTA|Ventral Tegmental Area]] (LMC.MM.VTA) | * [[BrainRegionLMC_MM_VTA|Ventral Tegmental Area]] (LMC.MM.VTA) | ||
'''Cerebral Cortex''' (NC): | '''Cerebral Cortex''' (NC): | ||
* Anterior Lobe | * Anterior Lobe | ||
| + | ** [[BrainCenterNC_ACG|Anterior Cingulate Area]] (NC.ACG) | ||
| + | ** [[BrainRegionNMA_NC_MC|Motor Cortex]] (NMA.NC.MC) | ||
** Prefrontal Cortex | ** Prefrontal Cortex | ||
*** [[BrainCenterNC_AL_LPFC|Lateral Prefrontal Cortex]] (NC.AL.LPFC) | *** [[BrainCenterNC_AL_LPFC|Lateral Prefrontal Cortex]] (NC.AL.LPFC) | ||
*** [[BrainCenterNC_AL_OMPFC|Orbitomedial Prefrontal Cortex]] (NC.AL.OMPFC) | *** [[BrainCenterNC_AL_OMPFC|Orbitomedial Prefrontal Cortex]] (NC.AL.OMPFC) | ||
| − | |||
| − | |||
** [[BrainCenterNC_PMC|Premotor Cortex]] (NC.PMC) | ** [[BrainCenterNC_PMC|Premotor Cortex]] (NC.PMC) | ||
** [[BrainCenterNMA_NC_SMC|Supplementary Motor Cortex]] (NMA.NC.SMC) | ** [[BrainCenterNMA_NC_SMC|Supplementary Motor Cortex]] (NMA.NC.SMC) | ||
| + | * [[BrainCenterNC_LOBE_OCC|Occipital Lobe]] (NC.LOBE.OCC) | ||
| + | * Parahippocampal Lobe | ||
| + | ** Anterior Parahippocampal Gyrus | ||
| + | *** [[BrainCenterFMM_NC_PHA_RS|Retrosubicular Area]] (FMM.NC.PHA.RS) | ||
| + | *** [[BrainCenterNC_PHA_RH|Rhinal Cortex]] (NC.PHA.RH) | ||
| + | ** [[BrainCenterFMM_NC_PHP|Posterior Parahippocampal Gyrus]] (FMM.NC.PHP) | ||
* Parietal Lobe | * Parietal Lobe | ||
** [[BrainCenterNC_IPL|Inferior Parietal Lobule]] (NC.IPL) | ** [[BrainCenterNC_IPL|Inferior Parietal Lobule]] (NC.IPL) | ||
| + | ** [[BrainCenterNSA_NC_IPS|Intraparietal Sulcus]] (NSA.NC.IPS) | ||
** [[BrainCenterNC_MPL|Medial Parietal Lobule]] (NC.MPL) | ** [[BrainCenterNC_MPL|Medial Parietal Lobule]] (NC.MPL) | ||
** Postcentral Gyrus | ** Postcentral Gyrus | ||
| − | |||
*** [[BrainCenterNC_PG_APC|Anterior Parietal Cortex]] (NC.PG.APC) | *** [[BrainCenterNC_PG_APC|Anterior Parietal Cortex]] (NC.PG.APC) | ||
*** [[BrainCenterNC_PG_LPC|Lateral Parietal Cortex]] (NC.PG.LPC) | *** [[BrainCenterNC_PG_LPC|Lateral Parietal Cortex]] (NC.PG.LPC) | ||
| + | *** [[BrainCenterNC_PO|Parietal Operculum]] (NC.PO) | ||
** [[BrainCenterNC_SPL|Superior Parietal Lobule]] (NC.SPL) | ** [[BrainCenterNC_SPL|Superior Parietal Lobule]] (NC.SPL) | ||
| − | |||
| − | |||
* Temporal Lobe | * Temporal Lobe | ||
** [[BrainCenterNSA_NC_IT|Inferotemporal Area]] (NSA.NC.IT) | ** [[BrainCenterNSA_NC_IT|Inferotemporal Area]] (NSA.NC.IT) | ||
| + | ** [[BrainCenterNC_INS|Insular Cortex]] (NC.INS) | ||
| + | ** [[BrainCenterNC_STG|Superior Temporal Gyrus]] (NC.STG) | ||
** [[BrainCenterNSA_NC_TTG|Transverse Temporal Gyrus]] (NSA.NC.TTG) | ** [[BrainCenterNSA_NC_TTG|Transverse Temporal Gyrus]] (NSA.NC.TTG) | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
'''Peripheral Nervous System''' (PNS): | '''Peripheral Nervous System''' (PNS): | ||
| − | |||
| − | |||
| − | |||
* Parasympathetic Ganglia | * Parasympathetic Ganglia | ||
| + | ** [[BrainCenterPN_PSYM_BD|Body Parasympathetic Ganglia]] (PN.PSYM.BD) | ||
** [[BrainCenterPN_PSYM_HD|Head and Neck Parasympathetic Ganglia]] (PN.PSYM.HD) | ** [[BrainCenterPN_PSYM_HD|Head and Neck Parasympathetic Ganglia]] (PN.PSYM.HD) | ||
| − | |||
* Sensory Ganglia | * Sensory Ganglia | ||
| + | ** [[BrainCenterLPC_PN_SG_DRG|Dorsal Root Ganglia]] (LPC.PN.SG.DRG) | ||
** [[BrainCenterPN_SG_SE|Sensory Exteroception Ganglia]] (PN.SG.SE) | ** [[BrainCenterPN_SG_SE|Sensory Exteroception Ganglia]] (PN.SG.SE) | ||
** [[BrainCenterPN_SG_SI|Sensory Interoception Ganglia]] (PN.SG.SI) | ** [[BrainCenterPN_SG_SI|Sensory Interoception Ganglia]] (PN.SG.SI) | ||
** [[BrainCenterLPC_PN_SG_VB|Vestibular Ganglion]] (LPC.PN.SG.VB) | ** [[BrainCenterLPC_PN_SG_VB|Vestibular Ganglion]] (LPC.PN.SG.VB) | ||
| − | ** [[ | + | * Sympathetic Ganglia |
| + | ** [[BrainCenterLAC_PN_SYM_PA|Paravertebral Sympathetic Ganglia]] (LAC.PN.SYM.PA) | ||
| + | ** [[BrainCenterLAC_PN_SYM_PR|Prevertebral Sympathetic Ganglia]] (LAC.PN.SYM.PR) | ||
'''Spinal Cord''' (SC): | '''Spinal Cord''' (SC): | ||
| − | |||
| − | |||
| − | |||
* [[BrainCenterSC_VH|Anterior/Ventral Horn]] (SC.VH) | * [[BrainCenterSC_VH|Anterior/Ventral Horn]] (SC.VH) | ||
* [[BrainCenterAVA_SC_CC|Central canal]] (AVA.SC.CC) | * [[BrainCenterAVA_SC_CC|Central canal]] (AVA.SC.CC) | ||
| + | * [[BrainCenterSC_IZ|Intermediate Zone]] (SC.IZ) | ||
| + | * [[BrainCenterBMA_SC_LH|Lateral Horn/Funiculus]] (BMA.SC.LH) | ||
| + | * [[BrainCenterBMA_SC_PH|Posterior/Dorsal Horn]] (BMA.SC.PH) | ||
'''Target''' (TG): | '''Target''' (TG): | ||
| − | |||
| − | |||
| − | |||
| − | |||
* Human Effectors | * Human Effectors | ||
| + | ** [[BrainRegionTARGET_TEA_VESSELS|Blood vessels]] (TARGET.TEA.VESSELS) | ||
| + | ** [[BrainRegionTARGET_TEA_BREAST|Breast]] (TARGET.TEA.BREAST) | ||
| + | ** [[BrainRegionTARGET_TEA_ENDOCRINE|Endocrine Glands]] (TARGET.TEA.ENDOCRINE) | ||
| + | ** [[BrainRegionTARGET_TEA_FACE|Face]] (TARGET.TEA.FACE) | ||
| + | ** [[BrainRegionTARGET_TEA_GENITALIA|Genitalia]] (TARGET.TEA.GENITALIA) | ||
| + | ** [[BrainRegionTARGET_TEA_HAND|Hand]] (TARGET.TEA.HAND) | ||
** [[BrainRegionTARGET_TEA_HEART|Heart]] (TARGET.TEA.HEART) | ** [[BrainRegionTARGET_TEA_HEART|Heart]] (TARGET.TEA.HEART) | ||
** [[BrainRegionTARGET_TEA_PROTECTOR|Immunity glands and meninges]] (TARGET.TEA.PROTECTOR) | ** [[BrainRegionTARGET_TEA_PROTECTOR|Immunity glands and meninges]] (TARGET.TEA.PROTECTOR) | ||
| + | ** [[BrainRegionTARGET_TEA_LEG|Leg]] (TARGET.TEA.LEG) | ||
| + | ** [[BrainRegionTARGET_TEA_LIVER|Liver]] (TARGET.TEA.LIVER) | ||
| + | ** [[BrainRegionTARGET_TEA_LUNG|Lung]] (TARGET.TEA.LUNG) | ||
** [[BrainRegionTARGET_TEA_FEEDER|Mouth feeder]] (TARGET.TEA.FEEDER) | ** [[BrainRegionTARGET_TEA_FEEDER|Mouth feeder]] (TARGET.TEA.FEEDER) | ||
** [[BrainRegionTARGET_TEA_SPEAKER|Mouth speaker]] (TARGET.TEA.SPEAKER) | ** [[BrainRegionTARGET_TEA_SPEAKER|Mouth speaker]] (TARGET.TEA.SPEAKER) | ||
| − | |||
** [[BrainRegionTARGET_TEA_NECK|Neck]] (TARGET.TEA.NECK) | ** [[BrainRegionTARGET_TEA_NECK|Neck]] (TARGET.TEA.NECK) | ||
| − | ** [[ | + | ** [[BrainRegionTARGET_TEA_RECTUM|Rectum]] (TARGET.TEA.RECTUM) |
** [[BrainRegionTARGET_TEA_STOMACH|Stomach]] (TARGET.TEA.STOMACH) | ** [[BrainRegionTARGET_TEA_STOMACH|Stomach]] (TARGET.TEA.STOMACH) | ||
| − | |||
| − | |||
| − | |||
** [[BrainRegionTARGET_TEA_TRUNK|Trunk]] (TARGET.TEA.TRUNK) | ** [[BrainRegionTARGET_TEA_TRUNK|Trunk]] (TARGET.TEA.TRUNK) | ||
| − | |||
| − | |||
** [[BrainRegionTARGET_TEA_URETER|Ureter]] (TARGET.TEA.URETER) | ** [[BrainRegionTARGET_TEA_URETER|Ureter]] (TARGET.TEA.URETER) | ||
| − | ** [[ | + | * Human Sensors |
| − | ** [[ | + | ** [[BrainRegionTARGET_TSA_EAR|Ear]] (TARGET.TSA.EAR) |
| − | ** [[ | + | ** [[BrainRegionTARGET_TSA_EYE|Eye]] (TARGET.TSA.EYE) |
| + | ** [[BrainRegionTARGET_TSA_NOSE|Nose]] (TARGET.TSA.NOSE) | ||
= Circuits = | = Circuits = | ||
(generated) | (generated) | ||
Revision as of 18:51, 28 November 2018
Biological Life Research
Home -> BiologicalLifeResearch
This page is intended to create model of biological human brain based on open research results across the world. Related findings are structured by other research themes.
Overview
- Biological Model contains Central Nervous System (CNS), Peripheral Nervous System (PNS) and human Target Sensors and Target Effectors, connected together and systematically described in machine-readable format
- Model data are divided into Engine Data (mind.xml, target.xml), Internal Model Data (hmind, muscles, nerves, global.xml) and External Model Data (circuits)
- Engine Data are divided into
- Engine Core Data (mind.xml, mind.core.xml) - most probably universal items, independent of biological nature or phenotype
- Engine Lifecycle Data (mind.lifecycle.xml) - items supporting life functions of biological organism
- Engine Specific Data (mind.specific.xml, mind.integration.xml) - nervous system items responsible for handling specific human organs
- Engine Target Data (target.xml) - final sets of human sensors and effectors
- Internal Model Data provide human-readable descriptions and additional details
- Global Circuits are independent overlapping groups of regions (global.xml) which shed light on specific modality of mind function across many Mind Areas
- External Model Data provide thirdparty models, partial and sometimes contradicting, with their own visualization and schema linked with aHuman items identification
- Engine Data are divided into
- Detailed data are grouped using two distinct structures - Brain Centers and Mind Areas
- Brain Centers are well-known anatomical groups existing as major solid structures or sets of nuclei or cortices, located on specific anatomical area
- Mind Areas are aHuman functional structures grouping items implementing major mind functions
- Every Mind Area is a set of non-overlapping Local Circuits
- Local Circuit contains specific mind regions, circuits internal inter-region connections and circuit outbound connections, which establish brain area subfunction or the same function but handling specific aspect of human organism
- Every Mind Area is a set of non-overlapping Local Circuits
See further information:
- Description of model elements and attributes - Biological Model Metadata
- Full mind hierarchy - Mind Maps
- Spinal and cranial tracts - Mind Tracts
- Peripheral nervous System - Peripheral Brain
- Nervous tissue types - Neural Networks
- Global functional circuits - Overall Circuits
- How brain is developed from the very beginning - Brain Development
Mind Areas
Approach of defining areas:
- make areas functionally named and identified
- do not create thalamus area to avoid mixing unrelated paths, assign thalamus nuclei to other areas
- do not create limbic area to avoid mixing unrelated functions, assign limbic components to other areas
- take into account all subcortical nuclei and ganglia
- all areas mapped by Brodmann placed in cortical category
- consider only single left hemisphere
- consider area as set of groups of regions and links which serve similar function, with area corresponging to providing this function in several circuits (groups)
| Area Code | Area Name | Type | Function | Comments |
| aHuman | ||||
| TSA | Target Sensory Area | target | aHuman Target Sensors | Biological Sensors |
| TEA | Target Effectory Area | target | aHuman Target Effectors | Biological Motors |
| Lower Brain | ||||
| LLC | Locomotion Control Area | core | Learned Rythmic Movements | Locomotion Nuclei and Cerebellum |
| LAC | Autonomous Control Area | lifecycle | Autonomic Nuclei and Ganglia | Nuclei to Control Autonomic Organs and Autonomic Ganglia |
| LMC | Modulatory Contol Area | lifecycle | Ascending and Descending Non-Specific Modulation | Includes Nuclei Projecting Both Up and Down |
| LPC | Peripheral Control Area | specific | Conscious Control of Target | Sensory Ganglia, Conscious Sensory and Motor Nuclei |
| LRC | Motor Reflex Area | specific | Reflexive Motor Behavior | Nuclei of Reflex Circuits Resulting in Motor Behavior and Posture Maintenance |
| Forebrain | ||||
| FEC | Execution Control Area | core | Executing Motor Sequences | Premotor and Supplemental Sequences are Wrapped out via Basal Ganglia |
| FAM | Affective Motivations Area | core | Aggregate Body and Mental Motivations | Merges Top Body Feeling and Sensory Streams |
| FMM | Memory Management Area | core | Establish Hierarchical Memory | Top of Sensory Hierarchy |
| Neocortical Brain | ||||
| NMA | Motor Aggregation Area | core | Motor Hierarhical Aggregation | Wrap Out Motor Sequences to Specific Motor Steps |
| NDM | Decision Making Area | core | Sensory-Drive Associations with Working Memory | Choose Actions and Create Working Memory |
| NCP | Conscious Personality Area | core | Produce Mental Feeling | Handle Pain and Errors |
| NSA | Sensory Aggregation Area | specific | Unimodal Sensory Aggregation | Neocortical Sensory Data and Unimodal Aggregation |
| NPE | Unimodal Execution Area | specific | Initiate Polymodal Execution | Aggregate polymodal data, direct to planning and decision making |
Brain Structure Overview
(generated)
Forebrain Diencephalon (FD):
- Habenula (FAM.FD.HB)
- Hypothalamus (FD.HT)
- Retinal Nucleus (LPC.FD.RT)
- Subthalamus Area (FEC.FD.STA)
- Thalamus
- Cognitive Thalamus (FD.TH.CR)
- Motor Thalamus (FD.TH.MR)
- Sensory Thalamus (FD.TH.SR)
Forebrain Telencephalon (FT):
- Basal Ganglia (FEC.FT.BG)
- Extended Amygdala
- Amygdala (FAM.FT.AM)
- Central Extended Amygdala (FAM.FT.CEAM)
- Septal Nuclei (FAM.FT.SEP)
- Hippocampal Formation (FMM.FT.HF)
- Olfactory Nuclei (FT.OLF)
Hindbrain Myelencephalon (HL):
- Medullary Reticular Formation (HL.RF)
- Myelencephalic Motor Nuclei (HL.MN)
- Myelencephalic Parasympathetic Nuclei (HL.PSN)
- Myelencephalic Sensory Nuclei (HL.SN)
Hindbrain Metencephalon (HT):
- Cerebellar Complex (LLC.HT.CRC)
- Locus Coeruleus (LMC.HT.LC)
- Metencephalic Motor Nuclei (HT.MN)
- Metencephalic Sensory Nuclei (HT.SN)
- Pontine Reticular Formation (HT.RF)
- Pontine Tegmental Nuclei (HT.TG)
- Vestibular Nuclei (LPC.HT.VBN)
Midbrain Mesencephalon (MM):
- Mesencephalic Reticular Formation (MM.RF)
- Perhipheral Nuclei of Midbrain Mesencephalon (MM.PER)
- Periaqueductal Gray Matter (LMC.MM.PAG)
- Red Nucleus (LLC.MM.RD)
- Reflexes Nuclei of Midbrain Mesencephalon (MM.REF)
- Ventral Tegmental Area (LMC.MM.VTA)
Cerebral Cortex (NC):
- Anterior Lobe
- Anterior Cingulate Area (NC.ACG)
- Motor Cortex (NMA.NC.MC)
- Prefrontal Cortex
- Lateral Prefrontal Cortex (NC.AL.LPFC)
- Orbitomedial Prefrontal Cortex (NC.AL.OMPFC)
- Premotor Cortex (NC.PMC)
- Supplementary Motor Cortex (NMA.NC.SMC)
- Occipital Lobe (NC.LOBE.OCC)
- Parahippocampal Lobe
- Anterior Parahippocampal Gyrus
- Retrosubicular Area (FMM.NC.PHA.RS)
- Rhinal Cortex (NC.PHA.RH)
- Posterior Parahippocampal Gyrus (FMM.NC.PHP)
- Anterior Parahippocampal Gyrus
- Parietal Lobe
- Inferior Parietal Lobule (NC.IPL)
- Intraparietal Sulcus (NSA.NC.IPS)
- Medial Parietal Lobule (NC.MPL)
- Postcentral Gyrus
- Anterior Parietal Cortex (NC.PG.APC)
- Lateral Parietal Cortex (NC.PG.LPC)
- Parietal Operculum (NC.PO)
- Superior Parietal Lobule (NC.SPL)
- Temporal Lobe
- Inferotemporal Area (NSA.NC.IT)
- Insular Cortex (NC.INS)
- Superior Temporal Gyrus (NC.STG)
- Transverse Temporal Gyrus (NSA.NC.TTG)
Peripheral Nervous System (PNS):
- Parasympathetic Ganglia
- Body Parasympathetic Ganglia (PN.PSYM.BD)
- Head and Neck Parasympathetic Ganglia (PN.PSYM.HD)
- Sensory Ganglia
- Dorsal Root Ganglia (LPC.PN.SG.DRG)
- Sensory Exteroception Ganglia (PN.SG.SE)
- Sensory Interoception Ganglia (PN.SG.SI)
- Vestibular Ganglion (LPC.PN.SG.VB)
- Sympathetic Ganglia
- Paravertebral Sympathetic Ganglia (LAC.PN.SYM.PA)
- Prevertebral Sympathetic Ganglia (LAC.PN.SYM.PR)
Spinal Cord (SC):
- Anterior/Ventral Horn (SC.VH)
- Central canal (AVA.SC.CC)
- Intermediate Zone (SC.IZ)
- Lateral Horn/Funiculus (BMA.SC.LH)
- Posterior/Dorsal Horn (BMA.SC.PH)
Target (TG):
- Human Effectors
- Blood vessels (TARGET.TEA.VESSELS)
- Breast (TARGET.TEA.BREAST)
- Endocrine Glands (TARGET.TEA.ENDOCRINE)
- Face (TARGET.TEA.FACE)
- Genitalia (TARGET.TEA.GENITALIA)
- Hand (TARGET.TEA.HAND)
- Heart (TARGET.TEA.HEART)
- Immunity glands and meninges (TARGET.TEA.PROTECTOR)
- Leg (TARGET.TEA.LEG)
- Liver (TARGET.TEA.LIVER)
- Lung (TARGET.TEA.LUNG)
- Mouth feeder (TARGET.TEA.FEEDER)
- Mouth speaker (TARGET.TEA.SPEAKER)
- Neck (TARGET.TEA.NECK)
- Rectum (TARGET.TEA.RECTUM)
- Stomach (TARGET.TEA.STOMACH)
- Trunk (TARGET.TEA.TRUNK)
- Ureter (TARGET.TEA.URETER)
- Human Sensors
Circuits
(generated)
