Difference between revisions of "BiologicalLifeResearch"

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<pre style="color: green">Biological Life Research</pre>
 
<pre style="color: green">Biological Life Research</pre>
 
[[Home]] -> [[BiologicalLifeResearch]]
 
[[Home]] -> [[BiologicalLifeResearch]]
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__TOC__
 
__TOC__
  
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= Overall Brain =
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= Overview =
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+
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* [[OverallMindMaps|Mind Maps]]
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* [[MindTracts|Mind Tracts]]
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* [[PeripheralBrain|Peripheral Brain]]
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* [[OverallNeuralNetworks|Neural Networks]]
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* [[OverallCircuits|Overall Circuits]]
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* [[OverallBrainDevelopment|Brain Development]]
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= Biological Model =
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* '''Biological Model''' contains '''Central Nervous System''' (CNS), '''Peripheral Nervous System''' (PNS) and human '''Target Sensors''' and '''Target Effectors''', connected together and systematically described in machine-readable format
 +
* Model data are divided into '''Engine Data''' (mind.xml, target.xml), '''Internal Model Data''' (hmind, muscles, nerves, global.xml) and '''External Model Data''' (circuits)
 +
** Engine Data are divided into
 +
*** '''Engine Core Data''' (mind.xml, mind.core.xml) - most probably universal items, independent of biological nature or phenotype
 +
*** '''Engine Lifecycle Data''' (mind.lifecycle.xml) - items supporting life functions of biological organism
 +
*** '''Engine Specific Data''' (mind.specific.xml, mind.integration.xml) - nervous system items responsible for handling specific human organs
 +
*** '''Engine Target Data''' (target.xml) - final sets of human sensors and effectors
 +
** Internal Model Data provide human-readable descriptions and additional details
 +
*** '''Global Circuits''' are independent overlapping groups of regions (global.xml) which shed light on specific modality of mind function across many Mind Areas
 +
** External Model Data provide thirdparty models, partial and sometimes contradicting, with their own visualization and schema linked with aHuman items identification
 +
* Detailed data are grouped using two distinct structures - '''Brain Centers''' and '''Mind Areas'''
 +
** Brain Centers are well-known anatomical groups existing as major solid structures or sets of nuclei or cortices, located on specific anatomical area
 +
** Mind Areas are aHuman functional structures grouping items implementing major mind functions
 +
*** Every Mind Area is a set of non-overlapping '''Local Circuits'''
 +
**** Local Circuit contains specific mind regions, circuits internal inter-region connections and circuit outbound connections, which establish brain area subfunction or the same function but handling specific aspect of human organism
  
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* Biological Model contains Central Nervous System (CNS), Peripheral Nervous System (PNS) and human organs, connected together and systematically described in machine-readable format
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'''See further information:'''
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* Model data are divided into Engine Data (mind.*.xml, target.xml), Internal Model Data (hmind, muscles, nerves) and External Model Data (circuits)
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* Description of model elements and attributes - [[BiologicalModel|Biological Model Metadata]]
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* Engine Data are divided into Engine Core Data (mind.xml, mind.core.xml), Engine Lifecycle Data (mind.lifecycle.xml), Engine Speciic Data (mind.specific.xml, mind.integration.xml) and Engine Target Data (target.xml)
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* Full mind hierarchy - [[OverallMindMaps|Mind Maps]]
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* Detailed data are grouped using two distinct structures - Brain Centers and Mind Areas
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* Spinal and cranial tracts - [[MindTracts|Mind Tracts]]
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* Brain Centers are anatomical groups existing as major solid structures or sets of nuclei or cortices
+
* Peripheral nervous System - [[PeripheralBrain|Peripheral Brain]]
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* Brain Areas are functional structures grouping items implementing major mind functions
+
* Nervous tissue types - [[OverallNeuralNetworks|Neural Networks]]
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* see also: [[BiologicalModel|Biological Model Details]]
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* Global functional circuits - [[OverallCircuits|Overall Circuits]]
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* How brain is developed from the very beginning - [[OverallBrainDevelopment|Brain Development]]
  
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= Brain Areas =
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= Mind Areas =
  
 
'''Approach of defining areas''':
 
'''Approach of defining areas''':
 
* make areas functionally named and identified
 
* make areas functionally named and identified
−
* do not create thalamus and limbic area to avoid mixing unrelated paths, assign thalamus and limbic  nuclei to other areas
+
* do not create thalamus area to avoid mixing unrelated paths, assign thalamus nuclei to other areas
 +
* do not create limbic area to avoid mixing unrelated functions, assign limbic components to other areas
 
* take into account all subcortical nuclei and ganglia
 
* take into account all subcortical nuclei and ganglia
 
* all areas mapped by Brodmann placed in cortical category
 
* all areas mapped by Brodmann placed in cortical category
−
* reduce mind to one hemisphere
+
* consider only single left hemisphere
−
* consider area as set of groups of regions and links which serve similar function, with area corresponding to providing this function in several circuits (groups)
+
* consider area as set of groups of regions and links which serve similar function, with area corresponging to providing this function in several circuits (groups)
  
 
{| class=wikitable width=80%
 
{| class=wikitable width=80%
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* [[BrainCenterMM_PER|Perhipheral Nuclei of Midbrain Mesencephalon]] (MM.PER)
 
* [[BrainCenterMM_PER|Perhipheral Nuclei of Midbrain Mesencephalon]] (MM.PER)
 
* [[BrainRegionLMC_MM_PAG|Periaqueductal Gray Matter]] (LMC.MM.PAG)
 
* [[BrainRegionLMC_MM_PAG|Periaqueductal Gray Matter]] (LMC.MM.PAG)
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* [[BrainRegionLLC_MM_RD|Red Nucleus]] (LLC.MM.RD)
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* [[BrainCenterLLC_MM_RD|Red Nucleus]] (LLC.MM.RD)
 
* [[BrainCenterMM_REF|Reflexes Nuclei of Midbrain Mesencephalon]] (MM.REF)
 
* [[BrainCenterMM_REF|Reflexes Nuclei of Midbrain Mesencephalon]] (MM.REF)
 
* [[BrainRegionLMC_MM_VTA|Ventral Tegmental Area]] (LMC.MM.VTA)
 
* [[BrainRegionLMC_MM_VTA|Ventral Tegmental Area]] (LMC.MM.VTA)

Latest revision as of 23:51, 9 April 2019

Biological Life Research

Home -> BiologicalLifeResearch

bio-research.jpg

This page is intended to create model of biological human brain based on open research results across the world. Related findings are structured by other research themes.

Overview

  • Biological Model contains Central Nervous System (CNS), Peripheral Nervous System (PNS) and human Target Sensors and Target Effectors, connected together and systematically described in machine-readable format
  • Model data are divided into Engine Data (mind.xml, target.xml), Internal Model Data (hmind, muscles, nerves, global.xml) and External Model Data (circuits)
    • Engine Data are divided into
      • Engine Core Data (mind.xml, mind.core.xml) - most probably universal items, independent of biological nature or phenotype
      • Engine Lifecycle Data (mind.lifecycle.xml) - items supporting life functions of biological organism
      • Engine Specific Data (mind.specific.xml, mind.integration.xml) - nervous system items responsible for handling specific human organs
      • Engine Target Data (target.xml) - final sets of human sensors and effectors
    • Internal Model Data provide human-readable descriptions and additional details
      • Global Circuits are independent overlapping groups of regions (global.xml) which shed light on specific modality of mind function across many Mind Areas
    • External Model Data provide thirdparty models, partial and sometimes contradicting, with their own visualization and schema linked with aHuman items identification
  • Detailed data are grouped using two distinct structures - Brain Centers and Mind Areas
    • Brain Centers are well-known anatomical groups existing as major solid structures or sets of nuclei or cortices, located on specific anatomical area
    • Mind Areas are aHuman functional structures grouping items implementing major mind functions
      • Every Mind Area is a set of non-overlapping Local Circuits
        • Local Circuit contains specific mind regions, circuits internal inter-region connections and circuit outbound connections, which establish brain area subfunction or the same function but handling specific aspect of human organism

See further information:

Mind Areas

Approach of defining areas:

  • make areas functionally named and identified
  • do not create thalamus area to avoid mixing unrelated paths, assign thalamus nuclei to other areas
  • do not create limbic area to avoid mixing unrelated functions, assign limbic components to other areas
  • take into account all subcortical nuclei and ganglia
  • all areas mapped by Brodmann placed in cortical category
  • consider only single left hemisphere
  • consider area as set of groups of regions and links which serve similar function, with area corresponging to providing this function in several circuits (groups)
Area Code Area Name Type Function Comments
aHuman
TSA Target Sensory Area target aHuman Target Sensors Biological Sensors
TEA Target Effectory Area target aHuman Target Effectors Biological Motors
Lower Brain
LLC Locomotion Control Area core Learned Rythmic Movements Locomotion Nuclei and Cerebellum
LAC Autonomous Control Area lifecycle Autonomic Nuclei and Ganglia Nuclei to Control Autonomic Organs and Autonomic Ganglia
LMC Modulatory Contol Area lifecycle Ascending and Descending Non-Specific Modulation Includes Nuclei Projecting Both Up and Down
LPC Peripheral Control Area specific Conscious Control of Target Sensory Ganglia, Conscious Sensory and Motor Nuclei
LRC Motor Reflex Area specific Reflexive Motor Behavior Nuclei of Reflex Circuits Resulting in Motor Behavior and Posture Maintenance
Forebrain
FEC Execution Control Area core Executing Motor Sequences Premotor and Supplemental Sequences are Wrapped out via Basal Ganglia
FAM Affective Motivations Area core Aggregate Body and Mental Motivations Merges Top Body Feeling and Sensory Streams
FMM Memory Management Area core Establish Hierarchical Memory Top of Sensory Hierarchy
Neocortical Brain
NMA Motor Aggregation Area core Motor Hierarhical Aggregation Wrap Out Motor Sequences to Specific Motor Steps
NDM Decision Making Area core Sensory-Drive Associations with Working Memory Choose Actions and Create Working Memory
NCP Conscious Personality Area core Produce Mental Feeling Handle Pain and Errors
NSA Sensory Aggregation Area specific Unimodal Sensory Aggregation Neocortical Sensory Data and Unimodal Aggregation
NPE Unimodal Execution Area specific Initiate Polymodal Execution Aggregate polymodal data, direct to planning and decision making

Brain Structure Overview

(generated)


Forebrain Diencephalon (FD):

Forebrain Telencephalon (FT):

Hindbrain Myelencephalon (HL):

Hindbrain Metencephalon (HT):

Midbrain Mesencephalon (MM):

Cerebral Cortex (NC):

Peripheral Nervous System (PNS):

Spinal Cord (SC):

Target (TG):

Circuits

(generated)

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